I. G. Abril, N. Abril, and . Iversen, Methane dynamics in a shallow non-tidal estuary (Randers Fjord, Denmark), Marine Ecology Progress Series, vol.230, pp.171-181, 2002.
DOI : 10.3354/meps230171

. Imboden, The physical structure and dynamics of a deep, meromictic crater lake, Hydrobiologia, vol.487, pp.111-136, 2002.

. Albéric, Interactions between trace elements and dissolved organic matter in the stagnant anoxic deep layer of a meromictic lake, Limnology and Oceanography, vol.45, issue.5, pp.45-1088, 2000.
DOI : 10.4319/lo.2000.45.5.1088

C. I. Aselmann, P. Aselmann, and . Crutzen, Global distribution of natural freshwater wetlands and rice paddies, their net primary productivity, seasonality and possible methane emissions, Journal of Atmospheric Chemistry, vol.31, issue.108, pp.307-358, 1989.
DOI : 10.1007/BF00052709

. Assayag, Hydrological budget, carbon sources and biogeochemical processes in Lac Pavin (France): Constraints from ??18O of water and ??13C of dissolved inorganic carbon, Applied Geochemistry, vol.23, issue.10, pp.2800-2816, 2008.
DOI : 10.1016/j.apgeochem.2008.04.015

URL : https://hal.archives-ouvertes.fr/hal-00364864

D. Bastviken-bastviken, Methane, Encyclopedia of Inland Waters, pp.783-805, 2009.
DOI : 10.1016/B978-012370626-3.00117-4

. Bastviken, Fates of methane from different lake habitats: Connecting whole-lake budgets and CH 4 emissions, J. Geophys. Res, pp.113-02024, 2008.

. Beal, Manganese- and Iron-Dependent Marine Methane Oxidation, Science, vol.325, issue.5937, pp.325-184, 2009.
DOI : 10.1126/science.1169984

B. Boudreau and . Boudreau, Diagenetic Models and Their Implementation, 1997.
DOI : 10.1007/978-3-642-60421-8

. Carini, Aerobic methane oxidation and methanotroph community composition during seasonal stratification in Mono Lake, California (USA), Environmental Microbiology, vol.65, issue.8, pp.1127-1138, 2005.
DOI : 10.1017/S0376892902000103

C. Carrias and J. , La boucle microbienne en milieu lacustre : structure et fonctionnement des communautés picoplanctoniques et des protistes flagellés et ciliés, 1996.

. Carrias, Seasonal dynamics and vertical distribution of planktonic ciliates and their relationship to microbial food resources in the oligomesotrophic Lake Pavin, Arch. Hydrobiol, vol.143, pp.227-255, 1998.

. Colombet, Depth-Related Gradients of Viral Activity in Lake Pavin, Applied and Environmental Microbiology, vol.72, issue.6, pp.72-4440, 2006.
DOI : 10.1128/AEM.00021-06

URL : https://hal.archives-ouvertes.fr/hal-00525893

. Crowe, The methane clycle in ferruginous Lake Matano, 2010.

. Cytryn, Distribution and Diversity of Archaea Corresponding to the Limnological Cycle of a Hypersaline Stratified Lake (Solar Lake, Sinai, Egypt), Applied and Environmental Microbiology, vol.66, issue.8, pp.66-3269, 2000.
DOI : 10.1128/AEM.66.8.3269-3276.2000

. Devaux, Un écosystème lacustre profond: le lac Pavin, pp.10-1029, 1983.

. Eller, Cooccurrence of aerobic and anaerobic methane oxidation in the water column of lake Plusssee, Appl. Environ. Microbiol, pp.71-8925, 2005.

. Elvert, Archaea mediating anaerobic methane oxidation in deep-sea sediments at cold seeps of the eastern Aleutian subduction zone, Organic Geochemistry, vol.31, issue.11, pp.31-1175, 2000.
DOI : 10.1016/S0146-6380(00)00111-X

. Ertefai, Vertical distribution of microbial lipids and functional genes in chemically distinct layers of a highly polluted meromictic lake, Organic Geochemistry, vol.39, issue.11, pp.39-1572, 2008.
DOI : 10.1016/j.orggeochem.2008.07.009

A. F. Guérin, G. Guérin, and . Abril, Significance of pelagic aerobic methane oxidation in the methane and carbon budget of a tropical reservoir, Journal of Geophysical Research: Biogeosciences, vol.21, issue.G3, pp.112-122, 2007.
DOI : 10.1029/2006GL027929

. Hunter, Kinetic modeling of microbially-driven redox chemistry of subsurface environments: coupling transport, microbial metabolism and geochemistry, Journal of Hydrology, vol.209, issue.1-4, pp.53-80, 1998.
DOI : 10.1016/S0022-1694(98)00157-7

. Islas-lima, Evidence of anoxic methane oxidation coupled to denitrification, Water Research, vol.38, issue.1, pp.13-16, 2004.
DOI : 10.1016/j.watres.2003.08.024

. Iversen, Big Soda Lake (Nevada). 3. Pelagic methanogenesis and anaerobic methane oxidation1, Limnology and Oceanography, vol.32, issue.4, pp.804-814, 1987.
DOI : 10.4319/lo.1987.32.4.0804

K. , T. D. Karl, and B. D. Tilbrook, Production and transport of methane in oceanic particulate organic matter, Nature, vol.368, pp.732-734, 1994.

. Kumaraswamy, Methane Production and Oxidation in an Anoxic Rice Soil as Influenced by Inorganic Redox Species, Journal of Environment Quality, vol.30, issue.6, pp.2195-2201, 2001.
DOI : 10.2134/jeq2001.2195

. Lehours, La communauté procaryotique dans les zones anoxiques des deux écosystèmes lacustres : structure et diversité. Étude plus particulière de son écologie dans le monimolimnion d'un lac méromictique (Lac Pavin), 2006.

. Lehours, Anaerobic Microbial Communities in Lake Pavin, a Unique Meromictic Lake in France, Applied and Environmental Microbiology, vol.71, issue.11, pp.71-7389, 2005.
DOI : 10.1128/AEM.71.11.7389-7400.2005

. Lehours, Phylogenetic diversity of archae and bacteria in the anoxic zone of a meromictic lake, 2007.

. Lemarchand, Community composition and activity of prokaryotes associated to detrital particles in two contrasting lake ecosystems, FEMS Microbiology Ecology, vol.57, issue.3, pp.442-451, 2006.
DOI : 10.1111/j.1574-6941.2006.00131.x

URL : https://hal.archives-ouvertes.fr/hal-00527083

S. M. Lidstrom, L. Lidstrom, and . Somers, Seasonal study of methane oxidation in lake Washington, Appl. Environ. Microbiol, vol.47, pp.1255-1260, 1984.

M. Liss, P. S. Liss, and L. Merlivat, Air-Sea Gas Exchange Rates: Introduction and Synthesis, The Role of Air?Sea Exchange in Geochemical Cycling. Nato ASI Series, pp.113-127, 1986.
DOI : 10.1007/978-94-009-4738-2_5

. Liu, Methane concentration profiles in a lake with a permanently anoxic hypolimnion (Lake Lugano, Switzerland-Italy), Chemical Geology, vol.133, issue.1-4, pp.201-209, 1996.
DOI : 10.1016/S0009-2541(96)00090-3

P. D. Lovley, E. J. Lovley, and . Phillips, A rapid assay for microbially reducible ferric iron in aquatic sediments, Appl. Environ. Microbiol, vol.53, pp.1536-1540, 1987.

. Michard, Geochemical study of a crater lake: Pavin Lake, France ??? Identification, location and quantification of the chemical reactions in the lake, Chemical Geology, vol.115, issue.1-2, pp.103-115, 1994.
DOI : 10.1016/0009-2541(94)90147-3

. Michard, Vitesses de réaction de dissolution et précipitation au voisinage de l'interface oxydo-réducteur dans un lac méromictique : le lac Pavin (Puy de Dôme, France) Methane production and its fate in paddy fields: II. Oxidation of methane and its coupled ferric oxide reduction in subsoil, Rev. Sci. Eau Soil Sci. Plant Nutr, vol.16, pp.199-218, 1992.

. Modin, Denitrification with methane as external carbon source, Water Research, vol.41, issue.12, pp.2726-2738, 2007.
DOI : 10.1016/j.watres.2007.02.053

. Nauhaus, In vitro demonstration of anaerobic oxidation of methane coupled to sulphate reduction in sediment from a marine gas hydrate area, Environmental Microbiology, vol.137, issue.5, pp.296-305, 2002.
DOI : 10.1016/S0025-3227(01)00164-5

. Omlin, Biogeochemical model of Lake Z??rich: model equations and results, Ecological Modelling, vol.141, issue.1-3, pp.77-103, 2001.
DOI : 10.1016/S0304-3800(01)00256-3

. Quiblier-lloberas, Impact of grazing on phytoplankton in Lake Pavin (France): Contribution of different zooplankton groups, Journal of Plankton Research, vol.18, issue.3, pp.305-322, 1996.
DOI : 10.1093/plankt/18.3.305

. Raghoebarsing, A microbial consortium couples anaerobic methane oxidation to denitrification, Nature, vol.398, issue.7086, pp.440-918, 2006.
DOI : 10.1038/nature04617

M. Hyacinthe, A. M. Thullner, P. Laverman, and . Van-cappellen, Incorporating geomicrobial processes in reactive transport models of subsurface environments

R. Reichert and P. , AQUASIM 2.0 Computer Program for the Identification and Simulation of Aquatic Systems, User Manuel. EAWAG Report, 1998.

. Reichert, River water quality no. 1 (RWQM1): II. Biochemical process equations, Water Sci. Technol, pp.43-54, 2001.

. Robie, Thermodynamic properties of mineral and related substances at 298.15 K and 1 bar pressure and higher temperature, US Geol. Surv. Bull, pp.1452-1456, 1978.

H. J. Rudd, R. D. Rudd, and . Hamilton, Methane cycling in a cutrophic shield lake and its effects on whole lake metabolism 1, Limnology and Oceanography, vol.23, issue.2, pp.337-348, 1978.
DOI : 10.4319/lo.1978.23.2.0337

S. Sanders and R. , Compilation of Henry's Law Constants for Inorganic and Organic Species of Potential Importance in Environmental Chemistry, 1999.

. Schmid, Sources and sinks of methane in Lake Baikal: A synthesis of measurements and modeling, Limnology and Oceanography, vol.52, issue.5, pp.52-1824, 2007.
DOI : 10.4319/lo.2007.52.5.1824

. Sigg, Sigg, Metal transfer mechanisms in lakes; the role of settling particles, 1985.

E. Stumm, Chemical Processes in Lakes, pp.283-309, 1985.

. Smith, In situ measurement of methane oxidation in groundwater by using natural-gradient tracer test, Appl. Environ. Microbiol, vol.57, pp.1997-2004, 1991.

J. S. Smith, P. Smith, and . Jaffé, Modeling the transport and reaction of trace metals in water-saturated soils and sediments, Water Resources Research, vol.27, issue.4, pp.3135-3147, 1998.
DOI : 10.1029/98WR02227

. Solomon, Contribution of working group I to the fourth assessment report of the intergovernmental panel on climate change. Technical summary Climate Change, 2007.

G. M. Taillefert, J. Taillefert, and . Gaillard, Reactive transport modeling of trace elements in the water column of a stratified lake: iron cycling and metal scavenging, Journal of Hydrology, vol.256, issue.1-2, pp.16-34, 2002.
DOI : 10.1016/S0022-1694(01)00524-8

. Thiam, in preparation. Biogeochemical dynamics of molybdenum in a crater lake: seasonal impact and long term removal

. Utsumi, Dynamics of dissolved methane and methane oxidation in dimictic Lake Nojiri during winter, Limnology and Oceanography, vol.43, issue.1, pp.43-471, 1998.
DOI : 10.4319/lo.1998.43.1.0010

D. L. Valentine and . Valentine, Biogeochemistry and microbial ecology of methane oxidation in anoxic environments: a review, Antonie van Leeuwenhoek, vol.81, issue.1, pp.271-282, 2002.
DOI : 10.1023/A:1020587206351

W. P. Van-cappellen, Y. Van-cappellen, and . Wang, Cycling of iron and manganese in surface sediments; a general theory for the coupled transport and reaction of carbon, oxygen, nitrogen, sulfur, iron, and manganese, American Journal of Science, vol.296, issue.3, pp.296-197, 1996.
DOI : 10.2475/ajs.296.3.197

. Van-cappellen, Biogeochemical Transformations in Sediments: Kinetic Models of Early Diagenesis, Interactions of C, N, P and Biogeochemical Cycles and Global Change NATO ASI Series, pp.401-445, 1993.
DOI : 10.1007/978-3-642-76064-8_17

. Van-huissteden, High CH 4 flux from an arctic floodplain (Indigirka lowlands, Eastern Siberia), J. Geophys. Res, pp.110-02002, 2005.

. Dolman, Summer soil CH 4 emission and uptake in taiga forest near Yakutsk

V. Viollier and E. , Géochimie des éléments traces en milieu lacustre, 1995.

. Viollier, Geochemical study of a crater lake: the Lake Pavin, France ? trace element behaviour in the monimolimnion, Chem. Geol, pp.125-161, 1995.

. Viollier, Geochemical study of a crater lake: Lake Pavin, Puy de D??me, France. Constraints afforded by the particulate matter distribution in the element cycling within the lake, Chemical Geology, vol.142, issue.3-4, pp.142-225, 1997.
DOI : 10.1016/S0009-2541(97)00093-4

P. R. Melas-kyriazi and . Girguis, New constrants on methane fluxes and rates of anaerobic methane oxidation in a Gulf of Mexico brine pool via in situ mass spectrometry, Deep Sea Res. II, vol.57, pp.2022-2029, 2010.

W. Whiticar and M. J. , Stable Isotopes and Global Budgets, Atmospheric Methane: Sources, Sinks, and Role in Global Change. NATO ASI Series I, Global Environmental, pp.138-167, 1993.
DOI : 10.1007/978-3-642-84605-2_8

Z. M. Winfrey, J. G. Winfrey, and . Zeikus, Microbial methanogenesis and acetate metabolism in a meromictic lake, Appl. Environ. Microbiol, vol.37, pp.213-221, 1979.

B. A. Zehnder, T. D. Zehnder, and . Brock, Anaerobic methane oxidation: occurrence and ecology, Appl. Environ. Microbiol, pp.39-194, 1980.